Publications

Peer reviewed publications

* indicates graduate or undergraduate co-author
1 indicates co-first authorship
  1. R. L. Baker, W. F. Leong, S. Welch, J. N. Maloof, and C. Weinig. In prep. eQTL mapping reveals mechanistic connections between transcriptomic co-expression network modeling and QTLs for estimating the genomic architecture of Brassica rapa development. For Genetics
  2. Markelz, R. J. C., R. L. Baker, D. Freund, N. An, U. K. Devisetty, M. F. Covington, M. T. Brock, A. Hegeman, S. Welch, C. Weinig, D. Kliebenstein, and J. N. Maloof. In prep. Systems genetics in Brassica rapa reveals genotype to phenotype connections from high-throughput phenotyping data. For eLife
  3. Wang, D. R.¹, C. R. Guadagno¹, X. Mao, D. S. Mackay, J. R. Pleban*, R. L. Baker, C. Weinig, J-L. Jannick, B. Ewers. Submitted. Can genomics inform physiological complexity in plant process models?  Journal of Experimental Biology
    ¹Co-first authors
  4. Rubin, M. J., M. T. Brock, R. L. Baker, K. Anderson*, S. Wilcox, S. Davis, and C. Weinig. 2018. Circadian rhythms are associated with shoot architecture and plant performance. New Phytologist 219:246-258 abstract |pdf
  5. Baker, R. L., W. F. Leong, S. Welch, and C. Weinig. 2018. Mapping and predicting non-linear Brassica rapa growth phenotypes based on Bayesian and frequentist  trait estimation. G3: Genes | Genomes | Genetics  8(4): 1247-1258 abstract | pdf
  6. Baker, R. L¹., W. F. Leong¹, M. T. Brock, M. Rubin, N. An*, S. Welch, and C. Weinig. 2018. Bayesian estimation and use of high-throughput remote sensing indices for quantitative genetic analyses of leaf growth. Theoretical and Applied Genetics 131(2):283-298 abstract | pdf
    ¹Co-first authors.
  7. An, N.*, S. Welch, R. J. Markelz, R. L. Baker, C. Palmer, J. Ta*, J. Maloof and C. Weinig. 2017. Quantifying time-series of leaf morphology using 2D and 3D photogrammetry methods for high-throughput plant phenotyping. Computers and Electronics in Agriculture 135:222–232 abstract | pdf
  8. Baker, R. L., Y. Yarkhunova*, K. Vidal*, B. Ewers, and C. Weinig. 2017. Polyploidy and the relationship between leaf structure and function: Implications for the evolution of correlations between anatomy, morphology, and physiology in Brassica. BMC Plant Biology 17(3) open access pdf
  9. An, N.*, C. M. Palmer, R. L. Baker, R. J. C. Markelz, J. Ta*, J. N. Maloof, S. M. Welch, and C. Weinig. 2016. Plant high-throughput phenotyping using photogrammetry and imaging techniques to measure leaf length and rosette area. Computers and Electronics in Agriculture 127:376-394 abstract | pdf
  10. Yarkhunova, Y.*, C., E. Edwards, R. L. Baker, B. E. Ewers, and C. Weinig. 2016. Selection during domestication affects the circadian clock and expression of ecophysiological traits. New Phytologist 210(1):133-144 abstract | pdf
  11. Baker, R. L., W. F. Leong, M. T. Brock, R. J. Cody Markelz, M. F. Covington, U. K. Devisetty, C. E. Edwards, J. Maloof, S. Welch, and C. Weinig. 2015. Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape. New Phytologist. 208(1) 257-268 abstract | pdf
    • Selected for Commentary in New Phytologist > > pdf
  12. Baker, R. L., E. Scherbatskoy*, C. Lay* and P. K. Diggle. 2014. Developmental plasticity of shoot architecture: Morphological expression and ecologically relevant onset in locally adapted populations of Mimulus guttatus. International Journal of Plant Sciences 175(1):59-69 abstract | pdf
  13. Baker, R. L., L. C. Hileman and P. K. Diggle. 2012. Patterns of shoot architecture in locally adapted populations are linked to intraspecific differences in gene regulation. New Phytologist 196(1):271-281 abstract | pdf
  14. Baker, R. L. and P. K. Diggle. 2011. Node-specific branching and heterochronic changes underlie population-level differences in Mimulus guttatus (Phrymaceae) shoot architecture. American Journal of Botany 98(12):1924-1934 abstract | pdf
  15. Diggle, P. K., N. J. Abrahamson*, R. Baker, M. G. Barnes*, T. L. Koontz*, C. Lay*, J. S. Medeiros*, J. Murgel*, M. G. M. Shaner*, H. L. Simpson*, C. C. Wu* and D. L. Marshall. 2010. Dynamics of maternal and paternal effects on embryo and seed development in wild radish (Raphanus sativus). Annals of Botany 106(2):309-313 abstract | pdf
  16. Noyes, R.D., R. Baker, and B. Mai*. 2007. Mendelian segregation for two-factor apomixis in Erigeron annuus (Asteraceae). Heredity 98:92-98 abstract | pdf

Technical/Non-indexed publications

  1. Baker, R. L., M. T. Brock, M. Rubin*, J. Maloof, S. Welch, and C. Weinig. 2015. Mapping function valued traits in Brassica rapa. Wyoming Agricultural Experiment Station pp. 19-20.
  2. Baker, R. L. 2010. Use of the Scanning Electron Microscope. In P. Diggle, Plant Eco-Evo-Devo (pp 54-56).